r

rOpenSci submissions

Comparing rOpenSci review process to the Bioconductor review process. Most important differences are external reviewers and build on external machines as well as a longer review time.

Bioconductor submissions: reviews

Looking in detail to Bioconductor sumbissions: interactions between bots, reviewers and the community.

Social activities on GitHub

Presenting the socialGH package to retrieve information from GitHub.

Bioconductor submissions

Exploring the submission process to Bioconductor. What happens, how long does it take, what are the common problems and solutions for new contributors.

R quarantine house

Checking quarantine environments

R weekly new editor

Checking who can be Rweekly.org editor with R

CRAN dependencies

New policy in CRAN With the new policy of a maximum of 20 packages in Imports. Let’s see how many dependencies has each package on CRAN and Bioconductor: CRAN ap <- available.

Debugging only when needed

One of the worst thing I experienced is having a bug in a nested call of functions. If it is not simple the problems comes to isolate when and why does it occur.

Christmas tree

So it is Christmas and I want a tree. I found this new package experimental ggfx and I thought it would be nice to use it for the lights. Then some time later I found (through twitter) this other repo about building trees.

Models

Introduction I have learned a lot about linear models through carefully reading limma’s vignette. However from time to time I find that I cannnot do the model of the effects as I wish to compare the samples as I need.